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Publications by Anvik, John

In Journal (refereed)

1. J. Anvik, J. Schaeffer, D. Szafron, K. Tan. "Asserting the utility of CO2P3S using the Cowichan Problem Set". Journal of Parallel and Distributed Computing, 65, pp 1542-1557, January 2005. PDFview
2. D. Szafron, P. Lu, R. Greiner, D. Wishart, B. Poulin, R. Eisner, Z. Lu, J. Anvik, D. Meeuwis, A. Fyshe, C. Macdonell. "Proteome Analyst: Custom Predictions with Explanations in a Web-based Tool for High-Throughput Proteome Annotations". Nucleic Acids Research (NAR), 32, pp W365-W371, July 2004. PDFview
3. Z. Lu, D. Szafron, R. Greiner, P. Lu, D. Wishart, B. Poulin, J. Anvik, C. Macdonell, R. Eisner. "Predicting Subcellular Localization of Proteins using Machine-Learned Classifiers". Bioinformatics, 20(4), pp 547--556, March 2004. PDFview
4. S. MacDonald, J. Anvik, S. Bromling, J. Schaeffer, D. Szafron, K. Tan. "From Patterns to Frameworks to Parallel Programs". Parallel Computing, 28(12), pp 1663-1683, January 2002. PDFview

In Conference (refereed)

5. D. Szafron, B. Poulin, R. Eisner, P. Lu, R. Greiner, D. Wishart, A. Fyshe, B. Pearcy, C. Macdonell, J. Anvik. "Visual Explanation and Auditing of Evidence with Additive Classifiers". Innovative Applications of Artificial Intelligence, July 2006. PDFview
6. K. Tan, D. Szafron, J. Schaeffer, J. Anvik, S. MacDonald. "Using Generative Design Patterns to Generate Parallel Code for a Distributed Memory Environment". ACM Sigplan Symposium on Principles and Practice of Parallel Programming, pp 203-215, January 2003. PDFview
7. J. Anvik, J. Schaeffer, D. Szafron, K. Tan. "Why Not Use a Pattern-based Parallel Programming System?". Euro-Par, pp 81-86, January 2003. PSview
8. S. Bromling, S. MacDonald, J. Anvik, J. Schaeffer, D. Szafron, K. Tan. "Pattern-based Parallel Programming". International Conference on Parallel Processing (ICPP), pp 257-265, February 2002. PDFview
9. S. MacDonald, D. Szafron, J. Schaeffer, J. Anvik, S. Bromling, K. Tan. "Generative Design Patterns". IEEE International Conference on Automated Software Engineering (ASE), pp 23-34, January 2002. PDFview

In Workshop

10. D. Szafron, R. Greiner, P. Lu, D. Wishart, Z. Lu, B. Poulin, R. Eisner, J. Anvik, C. Macdonell. "Proteome Analyst -- Transparent High-throughput Protein Annotation: Function, Localization and Custom Predictors". Bioinformatics Workshop, August 2003. PDFview
11. J. Anvik, R. Eisner, R. Greiner, P. Lu, Z. Lu, C. Macdonell, B. Poulin, D. Szafron, D. Wishart. " Custom Classifier Creation for Proteome Analyst". PENCE Annual Workshop, May 2003. view
12. Z. Lu, J. Anvik, R. Eisner, R. Greiner, P. Lu, C. Macdonell, B. Poulin, D. Szafron, D. Wishart. "Using Proteome Analyst for Protein Sub-cellular Localization Prediction". PENCE Annual Workshop, May 2003. view
13. J. Anvik, S. MacDonald, D. Szafron, J. Schaeffer, S. Bromling, K. Tan. "Generating Parallel Programs from the Wavefront Design Pattern". International Parallel and Distributed Processing Symposium (IPDS), pp 104, January 2002. PDFview
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