Publications by Anvik, John
In Journal (refereed)
1. | J. Anvik, J. Schaeffer, D. Szafron, K. Tan. "Asserting the utility of CO2P3S using the Cowichan Problem Set". Journal of Parallel and Distributed Computing, 65, pp 1542-1557, January 2005. |
2. | D. Szafron, P. Lu, R. Greiner, D. Wishart, B. Poulin, R. Eisner, Z. Lu, J. Anvik, D. Meeuwis, A. Fyshe, C. Macdonell. "Proteome Analyst: Custom Predictions with Explanations in a Web-based Tool for High-Throughput Proteome Annotations". Nucleic Acids Research (NAR), 32, pp W365-W371, July 2004. |
3. | Z. Lu, D. Szafron, R. Greiner, P. Lu, D. Wishart, B. Poulin, J. Anvik, C. Macdonell, R. Eisner. "Predicting Subcellular Localization of Proteins using Machine-Learned Classifiers". Bioinformatics, 20(4), pp 547--556, March 2004. |
4. | S. MacDonald, J. Anvik, S. Bromling, J. Schaeffer, D. Szafron, K. Tan. "From Patterns to Frameworks to Parallel Programs". Parallel Computing, 28(12), pp 1663-1683, January 2002. |
In Conference (refereed)
5. | D. Szafron, B. Poulin, R. Eisner, P. Lu, R. Greiner, D. Wishart, A. Fyshe, B. Pearcy, C. Macdonell, J. Anvik. "Visual Explanation and Auditing of Evidence with Additive Classifiers". Innovative Applications of Artificial Intelligence, July 2006. |
6. | K. Tan, D. Szafron, J. Schaeffer, J. Anvik, S. MacDonald. "Using Generative Design Patterns to Generate Parallel Code for a Distributed Memory Environment". ACM Sigplan Symposium on Principles and Practice of Parallel Programming, pp 203-215, January 2003. |
7. | J. Anvik, J. Schaeffer, D. Szafron, K. Tan. "Why Not Use a Pattern-based Parallel Programming System?". Euro-Par, pp 81-86, January 2003. |
8. | S. Bromling, S. MacDonald, J. Anvik, J. Schaeffer, D. Szafron, K. Tan. "Pattern-based Parallel Programming". International Conference on Parallel Processing (ICPP), pp 257-265, February 2002. |
9. | S. MacDonald, D. Szafron, J. Schaeffer, J. Anvik, S. Bromling, K. Tan. "Generative Design Patterns". IEEE International Conference on Automated Software Engineering (ASE), pp 23-34, January 2002. |
In Workshop
10. | D. Szafron, R. Greiner, P. Lu, D. Wishart, Z. Lu, B. Poulin, R. Eisner, J. Anvik, C. Macdonell. "Proteome Analyst -- Transparent High-throughput Protein Annotation: Function, Localization and Custom Predictors". Bioinformatics Workshop, August 2003. |
11. | J. Anvik, R. Eisner, R. Greiner, P. Lu, Z. Lu, C. Macdonell, B. Poulin, D. Szafron, D. Wishart. " Custom Classifier Creation for Proteome Analyst". PENCE Annual Workshop, May 2003. |
12. | Z. Lu, J. Anvik, R. Eisner, R. Greiner, P. Lu, C. Macdonell, B. Poulin, D. Szafron, D. Wishart. "Using Proteome Analyst for Protein Sub-cellular Localization Prediction". PENCE Annual Workshop, May 2003. |
13. | J. Anvik, S. MacDonald, D. Szafron, J. Schaeffer, S. Bromling, K. Tan. "Generating Parallel Programs from the Wavefront Design Pattern". International Parallel and Distributed Processing Symposium (IPDS), pp 104, January 2002. |